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A (36) | B (11) | C (38) | D (33) | E (21) | F (9) | G (10) | H (5) | I (26) | J (6) | K (3) | L (9) | M (19) | N (14) | O (18) | P (35) | Q (1) | R (25) | S (32) | T (17) | U (7) | V (5) | W (6)

	Research
	Research	Research
	Research Areas	Research
	Research Areas	Research
	Research Areas	Research
	Research Areas	Research
	Research Areas	Research
	Research Focus	Research
	Research Related Resources	Research, Resources
	Research Resources	Research, Resources
	Research Strategy
	Research topics
	Resilient Computing and Cybersecurity	Research
	Resources and Downloads
	Roberto Di Pietro Research Group	Front Page
	Robotics	Research
	Robotics, Intelligent Systems, and Control Lab
	Robust Knowledge Graph Embedding via Denoising	Neuro-Symbolic AI, Ontology engineering
	Rolf Krause Research Group	Front Page
	Sa1216: Development of colorectal cancer and matched healthy organoids from Saudi patients: a case study	bioengineering, Biomedical Informatics
	Saudi Summer Internship (SSI)	Opportunities
	Scientific Computing and Machine Learning Research Group	Front Page
	Secure Next Generation Resilient Systems Lab Research Group	Front Page
	Security Research Bearing Experimental Results Research Group	Front Page
	Semantic Disease Gene Embeddings (SmuDGE): phenotype-based disease gene prioritization without phenotypes	Neuro-Symbolic AI, Rare disease
	Semantic prioritization of novel causative genomic variants	Rare disease, Semantic similarity
	Semantic similarity	Semantic similarity
	Semantic similarity and machine learning with ontologies	Applied Ontology, Neuro-Symbolic AI, Semantic similarity
	Semantic units: organizing knowledge graphs into semantically meaningful units of representation	Applied Ontology
	Semi-Supervised Entity Alignment via Knowledge Graph Embedding with Awareness of Degree Difference	Neuro-Symbolic AI
	Sensing and Localization	Research
	Sensors Research Group	Front Page
	SIDEKICK: A Semantically Integrated Resource for Drug Effects, Indications, and Contraindications	Drug mechanisms, Neuro-Symbolic AI
	Similarity-based search of model organism, disease and drug effect phenotypes	Drug mechanisms, Rare disease, Semantic similarity
	Smart Health	Research
	Smart, Advanced Memory devices and Applications lab Research Group	Front Page
	SmuDGE	Biomedical Informatics, Drug mechanisms, Semantic similarity
	Software-Defined Advanced Networked and Distributed Systems Research Group	Front Page
	SPARQL2OWL: Towards Bridging the Semantic Gap Between RDF and OWL	Ontology engineering
	Spatio-Temporal Statistics and Data Science Research Group	Info
	Spin-Offs
	Startups
	STARVar	genomics, Phenotype informatics, Rare disease
	Starvar: symptom-based tool for automatic ranking of variants using evidence from literature and genomes	Biomedical Informatics, Rare disease
	Statistical Methodology	Research
	Statistics Program	Front Page
	Stochastic Numerics Research Group	Front Page
	Stochastic Processes and Mathematical Statistics	Front Page
	Structural and Functional Bioinformatics Research Group	Front Page
	Student Enrichment and Development	Study
	Su1295: Chemically defined peptide-based matrices enabling the development of colorectal organoid models for therapeutic applications and disease modeling	bioengineering, Drug mechanisms
	Taxon and trait recognition from digitized herbarium specimens using deep convolutional neural networks	Biomedical Informatics, Phenotype informatics
	Teaching
	The anatomy of phenotype ontologies: principles, properties and applications	Applied Ontology, Phenotype informatics
	The application of Large Language Models to the phenotype-based prioritization of causative genes in rare disease patients	Biomedical Informatics, Rare disease
	The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens	protein function
	The flora phenotype ontology (FLOPO): tool for integrating morphological traits and phenotypes of vascular plants	Applied Ontology, Phenotype informatics
	The Impact of Mechanical Cues on the Metabolomic and Transcriptomic Profiles of Human Dermal Fibroblasts Cultured in Ultrashort Self-Assembling Peptide 3D Scaffolds	bioengineering, genomics
	The informatics of developmental phenotypes	Biomedical Informatics, Phenotype informatics
	The role of ontologies in biological and biomedical research: a functional perspective	Applied Ontology, Biomedical Informatics
	The Semanticscience Integrated Ontology (SIO) for biomedical research and knowledge discovery	Applied Ontology, Ontology engineering
	Thematic series on biomedical ontologies in JBMS: challenges and new directions	Applied Ontology
	Theoretical Computer Science	Research
	Theses
	To MIREOT or not to MIREOT? A case study of the impact of using MIREOT in the Experimental Factor Ontology (EFO)	Applied Ontology, Ontology engineering
	Topics
	Towards semantic interoperability: finding and repairing hidden contradictions in biomedical ontologies	Applied Ontology, Ontology engineering
	Towards similarity-based differential diagnostics for common diseases	Biomedical Informatics, Phenotype informatics
	Units of Measurement Ontology (UO)	Applied Ontology, Ontology engineering
	UNMIREOT	Applied Ontology, Ontology engineering
	Updating the CEMO ontology for future epidemiological challenges	Applied Ontology
	Usage of cell nomenclature in biomedical literature	Biomedical Informatics, Ontology engineering
	Using Aber-OWL for fast and scalable reasoning over BioPortal ontologies	Ontology engineering
	Using AberOWL for fast and scalable reasoning over BioPortal ontologies	Ontology engineering
	Using SPARQL to Unify Queries over Data, Ontologies, and Machine Learning Models in the PhenomeBrowser Knowledgebase	Applied Ontology, Ontology engineering
	VarLand: A pipeline to map the structural landscape of missense variants at the proteome scale	Biomedical Informatics, genomics
	vec2SPARQL	Applied Ontology, Ontology engineering
	Vec2SPARQL: integrating SPARQL queries and knowledge graph embeddings	Neuro-Symbolic AI, Ontology engineering
	Visual Computing and Computational Imaging	Research
	Visual Computing Center	Front Page
	Walking RDF and OWL	Applied Ontology, Neuro-Symbolic AI, Ontology engineering
	Waves in Complex Media Research Group	Front Page
	What is the right sequencing approach? Solo VS extended family analysis in consanguineous populations	genomics, Rare disease
	Who We Are	Info
	Whole genome transcriptomic profiling reveals distinct sex-specific responses to heat stroke	bioengineering, genomics
	Wireless Communication